Saturday, June 19, 2010

Three-dimensional (3D) image reconstruction

The principle

Because contemporary CT scanners offer isotropic or near isotropic, resolution, display of images does not need to be restricted to the conventional axial images. Instead, it is possible for a software program to build a volume by "stacking" the individual slices one on top of the other. The program may then display the volume in an alternative manner.[25]

Multiplanar reconstruction

Typical screen layout for diagnostic software, showing one 3D and three MPR views

Multiplanar reconstruction (MPR) is the simplest method of reconstruction. A volume is built by stacking the axial slices. The software then cuts slices through the volume in a different plane (usually orthogonal). Optionally, a special projection method, such as maximum-intensity projection (MIP) or minimum-intensity projection (mIP), can be used to build the reconstructed slices.

MPR is frequently used for examining the spine. Axial images through the spine will only show one vertebral body at a time and cannot reliably show the intervertebral discs. By reformatting the volume, it becomes much easier to visualise the position of one vertebral body in relation to the others.

Modern software allows reconstruction in non-orthogonal (oblique) planes so that the optimal plane can be chosen to display an anatomical structure. This may be particularly useful for visualising the structure of the bronchi as these do not lie orthogonal to the direction of the scan.

For vascular imaging, curved-plane reconstruction can be performed. This allows bends in a vessel to be "straightened" so that the entire length can be visualised on one image, or a short series of images. Once a vessel has been "straightened" in this way, quantitative measurements of length and cross sectional area can be made, so that surgery or interventional treatment can be planned.

MIP reconstructions enhance areas of high radiodensity, and so are useful for angiographic studies. mIP reconstructions tend to enhance air spaces so are useful for assessing lung structure.

3D rendering techniques

Surface rendering
A threshold value of radiodensity is chosen by the operator (e.g. a level that corresponds to bone). A threshold level is set, using edge detection image processing algorithms. From this, a three-dimensional model can be constructed and displayed on screen. Multiple models can be constructed from various different thresholds, allowing different colors to represent each anatomical component such as bone, muscle, and cartilage. However, the interior structure of each element is not visible in this mode of operation.
Volume rendering
Surface rendering is limited in that it will only display surfaces which meet a threshold density, and will only display the surface that is closest to the imaginary viewer. In volume rendering, transparency and colors are used to allow a better representation of the volume to be shown in a single image—e.g. the bones of the pelvis could be displayed as semi-transparent, so that even at an oblique angle, one part of the image does not conceal another.

Image segmentation

Where different structures have similar radiodensity, it can become impossible to separate them simply by adjusting volume rendering parameters. The solution is called segmentation, a manual or automatic procedure that can remove the unwanted structures from the image.

Example

Some slices of a cranial CT scan are shown below. The bones are whiter than the surrounding area. (Whiter means higher attenuation.) Note the blood vessels (arrowed) showing brightly due to the injection of an iodine-based contrast agent.

Computed tomography of human brain, from base of the skull to top. Taken with intravenous contrast medium.

A volume rendering of this volume clearly shows the high density bones.

Bone reconstructed in 3D

After using a segmentation tool to remove the bone, the previously concealed vessels can now be demonstrated.

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